chorus-ai chorus_waveform issues

chorus-ai / chorus_waveform

CHoRUS waveform documentation and various waveform conversion scripts

MIT License

3 stars 3 forks source link

issues

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Summarize benchmarking runs

#57 briangow closed 5 months ago
0
bug fix for test cases

#56 dldmstjs500 closed 6 months ago
0
made bug fixes on VitalFormat

#55 dldmstjs500 closed 6 months ago
1
updated DICOM to use private metadata tags to speed up file load.

#54 tcpan closed 6 months ago
2
Add additional waveform signal to IOD definitions

#53 briangow closed 5 months ago
7
Format dicom

#52 tcpan closed 6 months ago
6
Format vital

#51 dldmstjs500 closed 6 months ago
6
Tidying DICOM format for the purpose of testing #42

#50 tompollard closed 6 months ago
2
Skip benchmark classes beginning with `Base` in the benchmark workflow

#49 tompollard closed 6 months ago
0
Tidying CCDEF format for the purpose of testing #42.

#48 tompollard closed 6 months ago
4
Tidying Zarr format for the purpose of testing #42.

#47 tompollard closed 6 months ago
1
Push benchmark results to the pull request.

#46 tompollard closed 6 months ago
0
Minor changes to the benchmark workflow

#45 tompollard closed 6 months ago
0
Update benchmark workflow to find classes within benchmark files.

#44 tompollard closed 6 months ago
0
Tidying, for the purpose of testing #42

#43 tompollard closed 6 months ago
3
[WIP] Add workflow to run new and modified benchmarks

#42 tompollard closed 6 months ago
3
Add custom xml waveform format for benchmarking

#41 briangow closed 6 months ago
7
Adding npy format handler

#40 del42 closed 6 months ago
10
Revert deletion of parquet format for benchmarking

#39 briangow closed 7 months ago
0
Add a summary of the signals for files being used for benchmarking

#38 briangow closed 6 months ago
0
Clean up calls to run benchmarking

#37 briangow opened 7 months ago
0
Add option to loop through multiple waveforms when running benchmarking

#36 briangow closed 7 months ago
4
Waveform benchmarking - add option to read from PhysioNet database

#35 briangow closed 7 months ago
0
Format dicom

#34 tcpan closed 7 months ago
1
Adds fidelity check

#33 wa6gz closed 7 months ago
6
Update CCDEF

#32 wa6gz closed 7 months ago
1
Adding Zarr format handler

#31 del42 closed 7 months ago
1
Adding Parquet format handler

#30 del42 closed 7 months ago
1
'nan' returning seek, read, and KiB. Benchmark is running on MacOS with M1

#29 del42 opened 7 months ago
1
Running benchmark on Mac M1 with python 3.9 , error occurs

#28 del42 opened 7 months ago
2
Adding CCDEF Format Class

#27 wa6gz closed 7 months ago
5
Waveform format standardization - identify the records to be used for benchmarking

#26 briangow closed 3 months ago
2
Update benchmarking README

#25 briangow closed 7 months ago
0
Add MIMIC-IV waveform file

#24 briangow closed 7 months ago
2
Instructions for adding new formats to the benchmarks.

#23 tompollard closed 7 months ago
1
Benchmarking: fix variable-layout multi-frequency

#22 bemoody closed 7 months ago
1
Benchmarking: run on non-Linux *nix systems

#21 bemoody closed 7 months ago
1
Waveform benchmark - `ValueError could not broadcast input array from shape (25610240,) into shape (26860800,)`

#20 briangow closed 7 months ago
1
Add testing framework with github workflow. Ref #16

#19 tompollard closed 7 months ago
0
Waveform benchmark raises ValueError (sampfrom must be a non-negative integer) because start_time is negative.

#18 tompollard closed 7 months ago
2
Running waveform benchmark script on MacOS raises FileNotFoundError (strace)

#17 tompollard closed 7 months ago
4
Add github workflow and basic test framework

#16 tompollard closed 7 months ago
0
Add sample data for the benchmarking task

#15 tompollard closed 7 months ago
2
UVAFormatConverter should have accompanying license

#14 tompollard closed 7 months ago
1
Add requirements file, .gitignore file, and license

#13 tompollard closed 7 months ago
0
Waveform benchmarking

#12 bemoody closed 7 months ago
0