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chr1swallace / coloc

Repo for the R package coloc
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Inconsistent test data results with demo by using runsusie() #51

Closed shengzheBian closed 2 years ago

shengzheBian commented 3 years ago

Hello,

I am testing the new method of coloc by reference artical “https://chr1swallace.github.io/coloc/articles/a06_SuSiE.html”. 

The result of coloc.abf() is consistent with article, while the result of runsusie() is not.（I have uploaded the codes and result info）

I am very confused about the above situation，and is this caused by the r package version? My Coloc version is  5.0.0.9002 and susieR is 0.11.7. I would be very grateful if you could help me.

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chr1swallace commented 3 years ago

Dear shengzheBian,

It looks like the warning you see about z_ld_weight is a new message from susieR and I need to update my susieR library and rerun.

Thank you for the heads up,

Chris

On Sun, 2021-04-18 at 03:10 -0700, shengzheBian wrote:

Hello,

I am testing the new method of coloc by reference artical “ https://chr1swallace.github.io/coloc/articles/a06_SuSiE.html”.

The result of coloc.abf() is consistent with article, while the result of runsusie() is not.（I have uploaded the codes and result info）

I am very confused about the above situation，and is this caused by the r package version? My Coloc version is 5.0.0.9002 and susieR is 0.11.7. I would be very grateful if you could help me.

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chr1swallace commented 2 years ago

runsusie now updated and doesn't use z_ld_weight