assumed % doublet formation rate

chris-mcginnis-ucsf / DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

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assumed % doublet formation rate #210

Open JoannaG88 opened 2 months ago

JoannaG88 commented 2 months ago

Hi, I am trying to use doubletFinder package on my scRNAseq data that was obtained after super loading i.e. assumed higher % of doublets. In the package description and real data example the "% doublet formation rate" is set to 7.5% and stated that it needs to be tailored to your own dataset. However, how do you tailor it, are there any clues or tips for that? I would be super grateful for any advice on that. Many thanks in advance!

MorticiaGiulia commented 1 month ago

I have the same question here.