Closed YColino closed 2 years ago
Hi @YColino -- I just tried the exact code you wrote and it worked fine. I thought maybe there could be an issue because your command creating cell.id.vec produces a vector of factors (better if its characters), but I still was able to get the readTable object.
I've seen that "differing number of rows" error before when the FASTQ files were corrupted. However, I just downloaded the files fresh and it worked fine, so maybe your local download was faulty for some reason? Have you tried re-downloading and re-installing deMULTIplex?
Also, as stated in the readme, I do not regularly check this github page so it is best to reach out directly if issues arise. Chris
Hi @chris-mcginnis-ucsf ,
I have the same error
I have checked ACAGTG_S3_L001_R1_001.fastq and ACAGTG_S3_L001_R2_001.fastq files and they have different amount of reads (550 and 705, respectively) and I think that is the problem. Do you know why that happen? should they (R1 and R2) have the same number of reads?
Best,
Agus
Hi Chris,
I am testing the pipeline with the HMEC example data, but I get the following error:
See my code bellow:
Am I missing something?
Thank you so much for sharing the LMOs,
Cheers, Yolanda