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chris-mcginnis-ucsf / MULTI-seq

R implementation of MULTI-seq sample classification workflow
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function MULTIseq.preProcess refers to a non-existing argument #24

Closed romunov closed 2 years ago

romunov commented 2 years ago

The call to MULTIseq.preProcess() function refers to argument chemistry but in the latest version of the deMULTIplex package, this argument doesn't exist. Can you elaborate on which version of the aforementioned package you're using?

readTable <- MULTIseq.preProcess(
  R1 = "../fastq/Mix1-Barcode/R1_paired.fastq.gz",
  R2 = "../fastq/Mix1-Barcode/R2_paired.fastq.gz",
  cellIDs = mix1_keep,
  chemistry = "V2"
)

This is a screenshot of the documentation from version 1.0.2.

image

romunov commented 2 years ago

Sorry, this was posted to the wrong repository.