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chris-mcginnis-ucsf / MULTI-seq

R implementation of MULTI-seq sample classification workflow
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cells being called HTO1_HTO1? #28

Closed bharris12 closed 1 year ago

bharris12 commented 2 years ago

When I run multiseq demux I sometimes get cells that have the label HTO1_HTO1 and are labeled as doublets. What part of the algorithm is doing that?

Thank you, Ben

chris-mcginnis-ucsf commented 1 year ago

Hi @bharris12 ,

I have no idea, but looks like you are using the Seurat version? If so, you should reach out to them, or provide code.

Chris