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chrisamiller / readDepth

R package for inferring copy number from read depth
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Error with libraries #12

Closed Danigore25 closed 1 year ago

Danigore25 commented 1 year ago

Hello, I've tried to run readDepth but R told me that I can't because of the lack of libraries, but I had them in two of my roots. Also, I've deleted them from my repositories and I couldn't download others like DNAcopy, my laptop says that these libraries can't be updated. I really tried to update them, and I still can't run the algorithm. What can I do?

chrisamiller commented 1 year ago

Apologies, but troubleshooting your R installation issues are beyond the scope of what I can help with here. You might have better luck from someone local who is knowledgeable in R.

That said, readDepth is no longer supported, and while it has a few niche uses, I generally recommend using other algorithms at this point - see: https://github.com/chrisamiller/readDepth#exclamation-notice

Best of luck