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chrisdembia / yeadon

The human inertia model developed by Fred Yeadon in 1990.
https://pypi.python.org/pypi/yeadon
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29 stars 9 forks source link

Human figure does not show up in the app #142

Closed moorepants closed 2 months ago

moorepants commented 2 months ago

When I made the last recent release the app was working. But something recent has broken that. Installing with:

conda create -n yeadon-test yeadon mayavi pyqt pyface

Gives: image

Conda list:

# packages in environment at /home/moorepants/miniconda/envs/yeadon-test:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
aiohttp                   3.9.5           py312h98912ed_0    conda-forge
aiosignal                 1.3.1              pyhd8ed1ab_0    conda-forge
alsa-lib                  1.2.12               h4ab18f5_0    conda-forge
aom                       3.9.1                hac33072_0    conda-forge
apptools                  5.1.0              pyh44b312d_0    conda-forge
attr                      2.5.1                h166bdaf_1    conda-forge
attrs                     23.2.0             pyh71513ae_0    conda-forge
blosc                     1.21.6               hef167b5_0    conda-forge
bzip2                     1.0.8                hd590300_5    conda-forge
c-ares                    1.28.1               hd590300_0    conda-forge
ca-certificates           2024.7.4             hbcca054_0    conda-forge
cairo                     1.18.0               hbb29018_2    conda-forge
configobj                 5.0.8              pyhd8ed1ab_0    conda-forge
dav1d                     1.2.1                hd590300_0    conda-forge
dbus                      1.13.6               h5008d03_3    conda-forge
double-conversion         3.3.0                h59595ed_0    conda-forge
eigen                     3.4.0                h00ab1b0_0    conda-forge
elfutils                  0.191                h924a536_0    conda-forge
envisage                  6.0.1              pyhd8ed1ab_0    conda-forge
expat                     2.6.2                h59595ed_0    conda-forge
ffmpeg                    7.0.1           gpl_h3589c0a_102    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 h77eed37_2    conda-forge
fontconfig                2.14.2               h14ed4e7_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
freetype                  2.12.1               h267a509_2    conda-forge
fribidi                   1.0.10               h36c2ea0_0    conda-forge
frozenlist                1.4.1           py312h98912ed_0    conda-forge
gettext                   0.22.5               h59595ed_2    conda-forge
gettext-tools             0.22.5               h59595ed_2    conda-forge
gl2ps                     1.4.2                hae5d5c5_1    conda-forge
glib                      2.80.3               h8a4344b_1    conda-forge
glib-tools                2.80.3               h73ef956_1    conda-forge
gmp                       6.3.0                hac33072_2    conda-forge
gnutls                    3.7.9                hb077bed_0    conda-forge
graphite2                 1.3.13            h59595ed_1003    conda-forge
gst-plugins-base          1.24.5               hbaaba92_0    conda-forge
gstreamer                 1.24.5               haf2f30d_0    conda-forge
harfbuzz                  8.5.0                hfac3d4d_0    conda-forge
hdf4                      4.2.15               h2a13503_7    conda-forge
hdf5                      1.14.3          nompi_hdf9ad27_105    conda-forge
icu                       73.2                 h59595ed_0    conda-forge
idna                      3.7                pyhd8ed1ab_0    conda-forge
importlib-metadata        8.0.0              pyha770c72_0    conda-forge
importlib_metadata        8.0.0                hd8ed1ab_0    conda-forge
importlib_resources       6.4.0              pyhd8ed1ab_0    conda-forge
jsoncpp                   1.9.5                h4bd325d_1    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
krb5                      1.21.3               h659f571_0    conda-forge
lame                      3.100             h166bdaf_1003    conda-forge
ld_impl_linux-64          2.40                 hf3520f5_7    conda-forge
lerc                      4.0.0                h27087fc_0    conda-forge
libabseil                 20240116.2      cxx17_h59595ed_0    conda-forge
libaec                    1.1.3                h59595ed_0    conda-forge
libarchive                3.7.4                hfca40fe_0    conda-forge
libasprintf               0.22.5               h661eb56_2    conda-forge
libasprintf-devel         0.22.5               h661eb56_2    conda-forge
libass                    0.17.1               h8fe9dca_1    conda-forge
libblas                   3.9.0           22_linux64_openblas    conda-forge
libcap                    2.69                 h0f662aa_0    conda-forge
libcblas                  3.9.0           22_linux64_openblas    conda-forge
libclang-cpp15            15.0.7          default_h127d8a8_5    conda-forge
libclang13                18.1.8          default_h6ae225f_0    conda-forge
libcups                   2.3.3                h4637d8d_4    conda-forge
libcurl                   8.8.0                hca28451_1    conda-forge
libdeflate                1.20                 hd590300_0    conda-forge
libdrm                    2.4.122              h4ab18f5_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 hd590300_2    conda-forge
libevent                  2.1.12               hf998b51_1    conda-forge
libexpat                  2.6.2                h59595ed_0    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libflac                   1.4.3                h59595ed_0    conda-forge
libgcc-ng                 14.1.0               h77fa898_0    conda-forge
libgcrypt                 1.11.0               h4ab18f5_0    conda-forge
libgettextpo              0.22.5               h59595ed_2    conda-forge
libgettextpo-devel        0.22.5               h59595ed_2    conda-forge
libgfortran-ng            14.1.0               h69a702a_0    conda-forge
libgfortran5              14.1.0               hc5f4f2c_0    conda-forge
libglib                   2.80.3               h8a4344b_1    conda-forge
libgomp                   14.1.0               h77fa898_0    conda-forge
libgpg-error              1.50                 h4f305b6_0    conda-forge
libhwloc                  2.11.0          default_h5622ce7_1000    conda-forge
libiconv                  1.17                 hd590300_2    conda-forge
libidn2                   2.3.7                hd590300_0    conda-forge
libjpeg-turbo             3.0.0                hd590300_1    conda-forge
liblapack                 3.9.0           22_linux64_openblas    conda-forge
libllvm15                 15.0.7               hb3ce162_4    conda-forge
libllvm18                 18.1.8               hc9dba70_0    conda-forge
libmicrohttpd             1.0.1                h97afed2_0    conda-forge
libnetcdf                 4.9.2           nompi_h135f659_114    conda-forge
libnghttp2                1.58.0               h47da74e_1    conda-forge
libnsl                    2.0.1                hd590300_0    conda-forge
libogg                    1.3.5                h4ab18f5_0    conda-forge
libopenblas               0.3.27          pthreads_h413a1c8_0    conda-forge
libopenvino               2024.2.0             h2da1b83_1    conda-forge
libopenvino-auto-batch-plugin 2024.2.0             hb045406_1    conda-forge
libopenvino-auto-plugin   2024.2.0             hb045406_1    conda-forge
libopenvino-hetero-plugin 2024.2.0             h5c03a75_1    conda-forge
libopenvino-intel-cpu-plugin 2024.2.0             h2da1b83_1    conda-forge
libopenvino-intel-gpu-plugin 2024.2.0             h2da1b83_1    conda-forge
libopenvino-intel-npu-plugin 2024.2.0             he02047a_1    conda-forge
libopenvino-ir-frontend   2024.2.0             h5c03a75_1    conda-forge
libopenvino-onnx-frontend 2024.2.0             h07e8aee_1    conda-forge
libopenvino-paddle-frontend 2024.2.0             h07e8aee_1    conda-forge
libopenvino-pytorch-frontend 2024.2.0             he02047a_1    conda-forge
libopenvino-tensorflow-frontend 2024.2.0             h39126c6_1    conda-forge
libopenvino-tensorflow-lite-frontend 2024.2.0             he02047a_1    conda-forge
libopus                   1.3.1                h7f98852_1    conda-forge
libpciaccess              0.18                 hd590300_0    conda-forge
libpng                    1.6.43               h2797004_0    conda-forge
libpq                     16.3                 ha72fbe1_0    conda-forge
libprotobuf               4.25.3               h08a7969_0    conda-forge
libsndfile                1.2.2                hc60ed4a_1    conda-forge
libsqlite                 3.46.0               hde9e2c9_0    conda-forge
libssh2                   1.11.0               h0841786_0    conda-forge
libstdcxx-ng              14.1.0               hc0a3c3a_0    conda-forge
libsystemd0               255                  h3516f8a_1    conda-forge
libtasn1                  4.19.0               h166bdaf_0    conda-forge
libtheora                 1.1.1             h4ab18f5_1006    conda-forge
libtiff                   4.6.0                h1dd3fc0_3    conda-forge
libunistring              0.9.10               h7f98852_0    conda-forge
libuuid                   2.38.1               h0b41bf4_0    conda-forge
libva                     2.22.0               hb711507_0    conda-forge
libvorbis                 1.3.7                h9c3ff4c_0    conda-forge
libvpx                    1.14.1               hac33072_0    conda-forge
libwebp-base              1.4.0                hd590300_0    conda-forge
libxcb                    1.16                 hd590300_0    conda-forge
libxcrypt                 4.4.36               hd590300_1    conda-forge
libxkbcommon              1.7.0                h2c5496b_1    conda-forge
libxml2                   2.12.7               hc051c1a_1    conda-forge
libzip                    1.10.1               h2629f0a_3    conda-forge
libzlib                   1.3.1                h4ab18f5_1    conda-forge
loguru                    0.7.2           py312h7900ff3_1    conda-forge
lz4-c                     1.9.4                hcb278e6_0    conda-forge
lzo                       2.10              hd590300_1001    conda-forge
mayavi                    4.8.2           py312h7d5288c_3    conda-forge
mesalib                   24.1.3               h3ac77ca_0    conda-forge
mpg123                    1.32.6               h59595ed_0    conda-forge
msgpack-python            1.0.8           py312h2492b07_0    conda-forge
multidict                 6.0.5           py312h98912ed_0    conda-forge
mysql-common              8.3.0                hf1915f5_4    conda-forge
mysql-libs                8.3.0                hca2cd23_4    conda-forge
ncurses                   6.5                  h59595ed_0    conda-forge
nettle                    3.9.1                h7ab15ed_0    conda-forge
nlohmann_json             3.11.3               h59595ed_0    conda-forge
nspr                      4.35                 h27087fc_0    conda-forge
nss                       3.102                h593d115_0    conda-forge
numpy                     2.0.0           py312h22e1c76_0    conda-forge
ocl-icd                   2.3.2                hd590300_1    conda-forge
openh264                  2.4.1                h59595ed_0    conda-forge
openssl                   3.3.1                h4ab18f5_1    conda-forge
p11-kit                   0.24.1               hc5aa10d_0    conda-forge
packaging                 24.1               pyhd8ed1ab_0    conda-forge
pcre2                     10.44                h0f59acf_0    conda-forge
pip                       24.0               pyhd8ed1ab_0    conda-forge
pixman                    0.43.2               h59595ed_0    conda-forge
ply                       3.11               pyhd8ed1ab_2    conda-forge
proj                      9.3.1                h1d62c97_0    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
pugixml                   1.14                 h59595ed_0    conda-forge
pulseaudio-client         17.0                 hb77b528_0    conda-forge
pyface                    8.0.0              pyhd8ed1ab_1    conda-forge
pygments                  2.18.0             pyhd8ed1ab_0    conda-forge
pyqt                      5.15.9          py312h949fe66_5    conda-forge
pyqt5-sip                 12.12.2         py312h30efb56_5    conda-forge
python                    3.12.4          h194c7f8_0_cpython    conda-forge
python_abi                3.12                    4_cp312    conda-forge
pyyaml                    6.0.1           py312h98912ed_1    conda-forge
qt-main                   5.15.8              ha2b5568_22    conda-forge
readline                  8.2                  h8228510_1    conda-forge
setuptools                70.1.1             pyhd8ed1ab_0    conda-forge
sip                       6.7.12          py312h30efb56_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
snappy                    1.2.1                ha2e4443_0    conda-forge
sqlite                    3.46.0               h6d4b2fc_0    conda-forge
svt-av1                   2.1.0                hac33072_0    conda-forge
tbb                       2021.12.0            h434a139_2    conda-forge
tbb-devel                 2021.12.0            h2069b90_2    conda-forge
tk                        8.6.13          noxft_h4845f30_101    conda-forge
toml                      0.10.2             pyhd8ed1ab_0    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
traits                    6.4.3           py312h98912ed_0    conda-forge
traitsui                  8.0.0              pyhd8ed1ab_0    conda-forge
tzdata                    2024a                h0c530f3_0    conda-forge
utfcpp                    4.0.5                ha770c72_0    conda-forge
vtk                       9.3.0           osmesa_py312h1234567_100    conda-forge
vtk-base                  9.3.0           osmesa_py312h1234567_100    conda-forge
vtk-io-ffmpeg             9.3.0           osmesa_py312h1234567_100    conda-forge
wayland                   1.23.0               h5291e77_0    conda-forge
wayland-protocols         1.36                 hd8ed1ab_0    conda-forge
wheel                     0.43.0             pyhd8ed1ab_1    conda-forge
wslink                    2.1.1              pyhd8ed1ab_0    conda-forge
x264                      1!164.3095           h166bdaf_2    conda-forge
x265                      3.5                  h924138e_3    conda-forge
xcb-util                  0.4.1                hb711507_2    conda-forge
xcb-util-image            0.4.0                hb711507_2    conda-forge
xcb-util-keysyms          0.4.1                hb711507_0    conda-forge
xcb-util-renderutil       0.3.10               hb711507_0    conda-forge
xcb-util-wm               0.4.2                hb711507_0    conda-forge
xkeyboard-config          2.42                 h4ab18f5_0    conda-forge
xorg-damageproto          1.2.1             h7f98852_1002    conda-forge
xorg-fixesproto           5.0               h7f98852_1002    conda-forge
xorg-glproto              1.4.17            h7f98852_1002    conda-forge
xorg-kbproto              1.0.7             h7f98852_1002    conda-forge
xorg-libice               1.1.1                hd590300_0    conda-forge
xorg-libsm                1.2.4                h7391055_0    conda-forge
xorg-libx11               1.8.9                hb711507_1    conda-forge
xorg-libxau               1.0.11               hd590300_0    conda-forge
xorg-libxdamage           1.1.5                h7f98852_1    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xorg-libxext              1.3.4                h0b41bf4_2    conda-forge
xorg-libxfixes            5.0.3             h7f98852_1004    conda-forge
xorg-libxrandr            1.5.2                h7f98852_1    conda-forge
xorg-libxrender           0.9.11               hd590300_0    conda-forge
xorg-libxt                1.3.0                hd590300_1    conda-forge
xorg-randrproto           1.5.0             h7f98852_1001    conda-forge
xorg-renderproto          0.11.1            h7f98852_1002    conda-forge
xorg-util-macros          1.19.3               h7f98852_0    conda-forge
xorg-xextproto            7.3.0             h0b41bf4_1003    conda-forge
xorg-xf86vidmodeproto     2.3.1             h7f98852_1002    conda-forge
xorg-xproto               7.0.31            h7f98852_1007    conda-forge
xz                        5.2.6                h166bdaf_0    conda-forge
yaml                      0.2.5                h7f98852_2    conda-forge
yarl                      1.9.4           py312h98912ed_0    conda-forge
yeadon                    1.5.0           py312h7900ff3_0    conda-forge
zipp                      3.19.2             pyhd8ed1ab_0    conda-forge
zlib                      1.3.1                h4ab18f5_1    conda-forge
zstd                      1.5.6                ha6fb4c9_0    conda-forge
moorepants commented 2 months ago

Note that I merged the conda forge version of the yeadon package for the latest version this morning.

moorepants commented 2 months ago

I tried to install the old version and the figure still doesn't show up:

conda create -n yeadon-test "yeadon<1.5" "numpy<2" pyqt mayavi
moorepants commented 2 months ago

This works:

conda create -n yeadon-test yeadon mayavi pyside6
moorepants commented 2 months ago

If I make an environment with only yeadon and mayavi then the figure does not show up (uses default mayavi backend)

conda create -n yeadon-test yeadon mayavi

this is grep of "qt":

(yeadon-test) moorepants@nandi:~$ conda list | grep qt
mayavi                    4.8.2           pyqt_py312h0377b68_204    conda-forge
pyqt                      5.15.9          py312h949fe66_5    conda-forge
pyqt5-sip                 12.12.2         py312h30efb56_5    conda-forge
qt-main                   5.15.8              ha2b5568_22    conda-forge

But in my base environment the figure does show up in the app and this is the same grep:

moorepants@nandi:~$ conda list | grep qt
aws-c-mqtt                0.10.4               hcc7299c_2    conda-forge
mayavi                    4.8.2           pyqt_py311h07046c7_204    conda-forge
pyqt                      5.15.9          py311hf0fb5b6_5    conda-forge
pyqt5-sip                 12.12.2         py311hb755f60_5    conda-forge
pyqtwebengine             5.15.9          py311hd529140_5    conda-forge
qt-main                   5.15.8              hc9dc06e_21    conda-forge
qt-webengine              5.15.8               h3e791b3_6    conda-forge
qt6-main                  6.7.2                h402ef58_0    conda-forge
qtawesome                 1.3.1              pyh9208f05_0    conda-forge
qtconsole                 5.5.2              pyhd8ed1ab_0    conda-forge
qtconsole-base            5.5.2              pyha770c72_0    conda-forge
qtpy                      2.4.1              pyhd8ed1ab_0    conda-forge
sphinxcontrib-qthelp      1.0.7              pyhd8ed1ab_0    conda-forge
vtk                       9.3.0           qt_py311h1234567_200    conda-forge
vtk-base                  9.3.0           qt_py311h1234567_200    conda-forge
vtk-io-ffmpeg             9.3.0           qt_py311h1234567_200    conda-forge

It seems that something is not being installed in the environment with only yeadon and mayvi but it is somehow present in my base environment where I have yeadon installed.

moorepants commented 2 months ago

Maybe qt6-main is missing in the environment?

moorepants commented 2 months ago 
conda create -n yeadon-test yeadon mayavi qt6-main

did not fix it: image

moorepants commented 2 months ago

It seems to be because vtk is missing. This gives a working app:

conda create -n yeadon-test yeadon mayavi vtk

So, why isn't vtk installed with mayavi?

moorepants commented 2 months ago

For some reason conda was installing the osmesa version of vtk instead of the q version. See: https://github.com/conda-forge/mayavi-feedstock/issues/85

This is fixed here:

https://github.com/conda-forge/mayavi-feedstock/pull/86

So now yeadon works again with conda create -n yeadon-test yeadon mayavi vtk.