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chrisgulvik / wf-assembly-snps

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Generate help message #14

Open SarahNadeau opened 2 years ago

SarahNadeau commented 2 years ago

Current behavior

I can't make the help message appear:

nextflow run main.nf --help 'true'
nextflow run main.nf --help

Yield:

N E X T F L O W  ~  version 21.10.6
Launching `main.nf` [amazing_turing] - revision: 27f503aaa6
Unknown config attribute `timeline.params.outpath` -- check config file: /Users/nadeau/Documents/CDC_ORISE/Projects/wf-assembly-snps/nextflow.config

And anyways the current help block is just a stubbed-in text.

Expected behavior

User gets the usage description.