Can I use MITObim with Nanopore reads?

chrishah / MITObim

MITObim - mitochondrial baiting and iterative mapping

MIT License

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Can I use MITObim with Nanopore reads? #53

Open hungweichen0327 opened 3 years ago

hungweichen0327 commented 3 years ago

Dear community,

According to the manual of MITObim, this useful software can use PacBio long reads for mitochondria assembly. Can I use Nanopore long reads, too? Thank you.

L1curry commented 1 year ago

nobody？

chrishah commented 1 year ago

Hi, MITObim and the version of the assembler (MIRA) it currently supports was developed before Nanopore came up and it hasn't yet been tested with this kind of data, at least not by me, I am afraid. Worth trying with the --platform pacbio setting, though. cheers, Christoph