Closed dylanHco closed 11 months ago
Hi @dylanHco,
Sorry for the delay in responding. I think this might be due to an oversight on my behalf in the Wiki documentation. When you run the pipeline without specifying a profile via the option -profile
, the pipeline will default to the standard
profile in the hybpiper.config
file. This standard profile does not use the software in the Singularity container, so unless you have the dependencies installed separately it won't find them - in this case it can't find hybpiper
. To use the software in the Singularity container, use e.g. -profile standard_singularity
. Or, if you are running the pipeline on a system using the scheduler SLURM, for example, use -profile slurm_singularity
. You might need to adapt the computing resources requested by editing the corresponding profile in the hybpiper.config
file.
Hope that helps. I'll update the WIki instructions, too.
Cheers,
Chris
Hi Chris,
Sorry for all the issues notifications. I guess after installing nothing has worked for me. Here are the most recent error just trying to run hybpiper alone: