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chrisquince / CONCOCT_ANVIO

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Filter contig by lengths and only cluster with large contigs. #2

Open chrisquince opened 9 years ago

chrisquince commented 9 years ago

If ANVIO can pass in the contig lengths then we can filter and only cluster with say contigs > 1000bp. The rest we can still assign to clusters based on responsibilities.

meren commented 9 years ago

(sorry, discard the previous one)

Hi Chris,

The updated archive file that contains kmers, coverages, and lengths, along with the updated python file is here:

https://www.dropbox.com/s/d9ayy1woov1m5cg/infant_kmers_and_coverages.tar.gz

I hope this helps!