I'm getting an error when trying to run desmanflow.nf on the included test data:
The NextFlow script exits at the GeneAssign.py command of the straintigs step with the following error (everything else is fine):
/home/lam4003/bin/DESMAN/lib/python3.6/site-packages/desman-2.1.1-py3.6-linux-x86_64.egg/desman/Eta_Sampler.py:155:` RuntimeWarning:
invalid value encountered in true_divide
gammaR = gammaR / row_sums[:, np.newaxis]
I have tried switching the script to python3 (as in #39) but I still get the same error. I have checked all of my environment variables and they seem to be in order. I've also checked the input files to see if anything's been deleted and they're all there. To make sure it's not slurm messing with the Nextflow script, I pulled out the GeneAssign.py command and tried it on the command line, but I got the exact same error.
I'm getting an error when trying to run desmanflow.nf on the included test data:
The NextFlow script exits at the GeneAssign.py command of the straintigs step with the following error (everything else is fine):
I have tried switching the script to python3 (as in #39) but I still get the same error. I have checked all of my environment variables and they seem to be in order. I've also checked the input files to see if anything's been deleted and they're all there. To make sure it's not slurm messing with the Nextflow script, I pulled out the GeneAssign.py command and tried it on the command line, but I got the exact same error.
Any insight into the problem? Thanks!