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chrisquince / DESMAN

De novo Extraction of Strains from MetAgeNomes
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cdd_to_cog.tsv #49

Closed marcomeola closed 3 years ago

marcomeola commented 3 years ago

Hi,

I am running through the complex example tutorial and am stuck at the following point. How do I get the cdd_to_cog.tsv file? Is it the output of any previous command? If yes, which one?

and extract out the annotated Cogs associated with called genes:

python3 $DESMAN/scripts/ExtractCogs.py -g ClusterEC.gff -b ClusterEC.out --cdd_cog_file $CONCOCT/scgs/cdd_to_cog.tsv > ClusterEC.cogs
marcomeola commented 3 years ago

The files can be found here:

https://github.com/BinPro/CONCOCT/tree/develop/scgs