search

chrisquince / STRONG

Strain Resolution ON Graphs
MIT License
44 stars 9 forks source link

Question about the test result and problem in downloading the synthetic data #121

Open yuxiangtan opened 2 years ago

yuxiangtan commented 2 years ago

Hi Seb,

I am not sure how could I find the ground truth of the test dataset (looks like it might be in the select.tsv), however, I check the result of my test run in the bayespaths folder, only 6 bins with 1 strain in each are available. This does not look like what is in the select.tsv. I am not sure what was wrong since the log of that run was good.

Meanwhile, I want to repeat your synthetic data, but I got error from downloading it, which looks like a permission problem:

wget https://strongtest.s3.climb.ac.uk/Synth_G45_S03D.tar.gz --2021-12-21 17:03:09-- https://strongtest.s3.climb.ac.uk/Synth_G45_S03D.tar.gz Resolving strongtest.s3.climb.ac.uk (strongtest.s3.climb.ac.uk)... 137.205.52.6 Connecting to strongtest.s3.climb.ac.uk (strongtest.s3.climb.ac.uk)|137.205.52.6|:443... connected. ERROR: cannot verify strongtest.s3.climb.ac.uk's certificate, issued by ‘/C=US/O=Let's Encrypt/CN=R3’: Issued certificate has expired. To connect to strongtest.s3.climb.ac.uk insecurely, use `--no-check-certificate'.

Let me know what I could do.

Best,

Yuxiang