On my run of the refactored pipeline the count.csv file was incorrectly generated with the same frequencies for each sample. This seems to be because the output of bam-readcount is identical for all samples (*.cnt.gz), although the bam files may differ.
On my run of the refactored pipeline the count.csv file was incorrectly generated with the same frequencies for each sample. This seems to be because the output of bam-readcount is identical for all samples (*.cnt.gz), although the bam files may differ.