chrisquince / STRONG

Strain Resolution ON Graphs
MIT License
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Benchmarking #58

Closed Sebastien-Raguideau closed 5 years ago

Sebastien-Raguideau commented 5 years ago

Create an evaluation folder. I think we should tidy the output a bit since for now we have one file by bin called for instance Bin_0_blastbest.tsv. Also there seems to be 2 independant evaluation procedures : yielding Bin_0_blastbest.tsv and SpeciesMaxCov.

There are no headers for all results files, it's hard to understand.

I changed the requirement.txt and the other yaml file. I created one file we can use to create a STRONG env quickly. You just need the following command conda env create -f conda_env.yaml