Concoct_refine python version issues

chrisquince / STRONG

Strain Resolution ON Graphs

MIT License

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Concoct_refine python version issues #85

Open KimSummers opened 4 years ago

KimSummers commented 4 years ago

Strong crashes in concoct_refine, due to issues with python methods changing. Can be resolved by running: sed -i 's/original_data.values()/original_data.values/g' $(which concoct_refine) sed -i 's/.as_matrix()/.values/g' $(which concoct_refine)

Sebastien-Raguideau commented 4 years ago

I did a fork of concoct, change this stuff and added an argument to vbgmm.fit. Chris, I did a pull request on that, do you have any possibility to examine pull request for concoct?