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chrisquince / STRONG

Strain Resolution ON Graphs
MIT License
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subgraph extraction yield whole 40k contigs for all cogs on it. #92

Closed Sebastien-Raguideau closed 4 years ago

Sebastien-Raguideau commented 4 years ago

This happens when the assembly is good even in high resolution and there is 1 well resolved contig with multiple scg on it. Issue is that the whole contig get passed down as a subgraph :

Here is an example : /mnt/gpfs/Hackathon/TestRuns/CA77_Seb/subgraphs/bin_merged/Bin_1/raw_subgraphs

EDIT : seems like I rediscovered issue#34, because bayespath output them as is. Not sure what's the best solution.

Sebastien-Raguideau commented 4 years ago

This has been dealt with by running rpsbalst/prodigal.