Because I was getting weird results on cfDNA data (getting mostly placental contribution), I discovered I had the same problem as discussed in one of your issues. I updated the code so it automatically reindexes the pandas dataframes to match the genomic coordinates between reference and patients' profiles, and it fixed it.
Also, I made the code a bit more numpy-ish, so it runs faster.
Hi,
Because I was getting weird results on cfDNA data (getting mostly placental contribution), I discovered I had the same problem as discussed in one of your issues. I updated the code so it automatically reindexes the pandas dataframes to match the genomic coordinates between reference and patients' profiles, and it fixed it.
Also, I made the code a bit more numpy-ish, so it runs faster.
Best regards,
Antoine