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christianparobek / skeleSim

Null models, performance testing, and power estimation with population simulations
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Quick questions simcoal GUI interface- migration #32

Closed smhoban closed 8 years ago

smhoban commented 8 years ago

General question- at each historical event in simcoal, when making a par file, you can usually define a new migration matrix (with all new migration rates). I guess we haven't implemented this in the GUI yet? i didn't see a place to add a second migration matrix (within a scenario)

EricArcher commented 8 years ago

I don't think Allan has implemented this in shiny. The fastsimcoal interface through strataG and the skelesim fsc.loadParameters function will accept a list of migration matrices though, so people creating a skelesim params object on the command line can do this. I'd say we leave this for a v1.2 release.

stranda commented 8 years ago

Eric's right, I have not implemented now. We only have a constant migration matrix possible at the moment. I like the idea of a v1.2 release a.

On Thu, Mar 17, 2016 at 10:54 AM, Eric Archer notifications@github.com wrote:

I don't think Allan has implemented this in shiny. The fastsimcoal interface through strataG and the skelesim fsc.loadParameters function will accept a list of migration matrices though, so people creating a skelesim params object on the command line can do this. I'd say we leave this for a v1.2 release.

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Allan Strand, Biology http://linum.cofc.edu College of Charleston Ph. (843) 953-9189 Charleston, SC 29424 Fax (843) 953-9199

stranda commented 8 years ago

Now this works. Specify as many migration matrices as needed (there is a counter right above the matrix input). They are indexed from 0 and can be referenced in the migration matrix