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christianparobek / skeleSim

Null models, performance testing, and power estimation with population simulations
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could not find function "graph.adjacency" #57

Closed liblig closed 8 years ago

liblig commented 8 years ago

This is an error I received while attempting to specify the 'among population migration' in the 'Scenario Conf' of the GUI.

In my R console I also have the following: Warning: Error in renderPlot: could not find function "graph.adjacency" Stack trace (innermost first): 77: renderPlot [serverplots.R#9] 69: output$networkPlot 2: runApp 1: skeleSimGUI

stranda commented 8 years ago

Please check that the "igraph" package is installed. That should do the trick. I think that Eric is playing around with dependencies right now. On Wed, May 25, 2016 at 7:01 PM, Libby Liggins notifications@github.com wrote:

This is an error I received while attempting to specify the 'among population migration' in the 'Scenario Conf' of the GUI.

In my R console I also have the following: Warning: Error in renderPlot: could not find function "graph.adjacency" Stack trace (innermost first): 77: renderPlot [serverplots.R#9] 69: output$networkPlot 2: runApp 1: skeleSimGUI

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Allan Strand, Biology http://linum.cofc.edu College of Charleston Ph. (843) 953-9189 Charleston, SC 29424 Fax (843) 953-9199

EricArcher commented 8 years ago

I've added igraph back to Depends and removed from Suggests. This should solve it.

Hopefully, we'll be able to get an exemption for this Check NOTE when we submit to CRAN:

checking package dependencies ... NOTE
Depends: includes the non-default packages:
  ‘strataG’ ‘rmetasim’ ‘igraph’ ‘shiny’ ‘shinyFiles’ ‘markdown’
  ‘ggplot2’
Adding so many packages to the search path is excessive and importing
selectively is preferable.