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christianpayer / MedicalDataAugmentationTool-VerSe

GNU General Public License v3.0
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How to generate landmark.csv #2

Closed zengchan closed 4 years ago

zengchan commented 4 years ago

Thank you very much for your open source code which helps me a lot. I have a question about the landmark.csv which is a littile different from the official JSON file. It much confuse me about the X coordinate value and how to generate my own landmark.csv.

christianpayer commented 4 years ago

Hi, I'm glad that the code can help you. You are right, the csv file contains coordinates in a different system than the json files. The original coordinates system is described in https://verse2019.grand-challenge.org/Data/. Our framework however, uses a different coordinate system for landmark annotations. We mainly use physical coordinates, same as e.g. ITK, SimpleITK and ITKSnap. I just committed the conversion script that we used for creating the csv files.