Open JXAUDZF opened 6 months ago
The newest version on Mandalorion (4.5) actually adds a meaningful gene_id. You'd just have to update and run it again with "-M FQ" (without the quotations). Should be very fast.
transcript_id are harder. I recommend you use Sqanti3 for that, which will match your isoforms to the annotation and give you a bunch of extra information as well.
the Isoform clean gtf file has not gene id and transcript id, therefore how to acquire the gene id of specific trancript?