Hi Christopher,
I'm glad that iRep provided a method for calculating replicate rates of microbes with metagenomes. Now I'm trying to calculate all the iRep values in a microbial community. That's not really easy for me, so I wonder is there a better way to do that?
Also the programs raise a error info:
Traceback (most recent call last): File "/home/lizw/anaconda3/bin/iRep", line 22, in <module> import lmfit File "/home/lizw/anaconda3/lib/python3.7/site-packages/lmfit/__init__.py", line 38, in <module> from .confidence import conf_interval, conf_interval2d File "/home/lizw/anaconda3/lib/python3.7/site-packages/lmfit/confidence.py", line 6, in <module> from scipy.optimize import root_scalar ImportError: cannot import name 'root_scalar' from 'scipy.optimize' (/home/lizw/anaconda3/lib/python3.7/site-packages/scipy/optimize/__init__.py)
I believe that's because the version of python is updating. So could you please recommend a steady python version environment or point out the problem?
Thank you for your time!
Hi Christopher, I'm glad that iRep provided a method for calculating replicate rates of microbes with metagenomes. Now I'm trying to calculate all the iRep values in a microbial community. That's not really easy for me, so I wonder is there a better way to do that? Also the programs raise a error info:
Traceback (most recent call last): File "/home/lizw/anaconda3/bin/iRep", line 22, in <module> import lmfit File "/home/lizw/anaconda3/lib/python3.7/site-packages/lmfit/__init__.py", line 38, in <module> from .confidence import conf_interval, conf_interval2d File "/home/lizw/anaconda3/lib/python3.7/site-packages/lmfit/confidence.py", line 6, in <module> from scipy.optimize import root_scalar ImportError: cannot import name 'root_scalar' from 'scipy.optimize' (/home/lizw/anaconda3/lib/python3.7/site-packages/scipy/optimize/__init__.py)I believe that's because the version of python is updating. So could you please recommend a steady python version environment or point out the problem? Thank you for your time!