christophertbrown / iRep

scripts for estimating bacteria replication rates based on population genome copy number variation
MIT License
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Restructure parsing #7

Closed MrOlm closed 7 years ago

MrOlm commented 7 years ago

Changed bin/iRep to be much lighter. Instead of having it's own parser, it calls the same parser as the regular iRep program. This way any changes you make to the parser (or the main method) are reflected in both bin/iRep and iRep/iRep.py.

To make this work I had to restructure iRep.py a bit too, but as a benefit you can now call the whole iRep pipeline from other python modules. This is mainly useful for testing :)