Closed BJCampbelllab closed 6 years ago
Okay, I see that the program needs matlab. I don't have it (it is expensive, I believe). Any workaround for that?
Hi,
iRep does not require Matlab or any software that needs to be purchased. It looks to me like you were trying to run gc_skew with python 2.7 instead of python 3. I recommend using pyenv to install python 3 and to manage different python versions.
Hope this helps!
Chris
On Jun 4, 2017, at 9:41 AM, BJCampbelllab notifications@github.com wrote:
Okay, I see that the program needs matlab. I don't have it (it is expensive, I believe). Any workaround for that?
— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub, or mute the thread.
On Jun 4, 2017, at 8:25 AM, BJCampbelllab notifications@github.com wrote:
Hi- I'm new to iRep, but am really eager to use it and see my results! I get this error when I run gc_skew: -bash-4.2$ gc_skew -f CB_Spr15_L08_bin.56.fa File "/usr/bin/gc_skew", line 49 print('%s: Too Short' % (name), file=sys.stderr) ^ SyntaxError: invalid syntax
Any help/suggestions would be appreciated!
— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub, or mute the thread.
Thanks! I'll let you know if I have any more issues.
Sent from my iPhone
On Jun 5, 2017, at 12:56 PM, christophertbrown notifications@github.com<mailto:notifications@github.com> wrote:
Hi,
iRep does not require Matlab or any software that needs to be purchased. It looks to me like you were trying to run gc_skew with python 2.7 instead of python 3. I recommend using pyenv to install python 3 and to manage different python versions.
Hope this helps!
Chris
On Jun 4, 2017, at 9:41 AM, BJCampbelllab notifications@github.com<mailto:notifications@github.com> wrote:
Okay, I see that the program needs matlab. I don't have it (it is expensive, I believe). Any workaround for that?
— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub, or mute the thread.
On Jun 4, 2017, at 8:25 AM, BJCampbelllab notifications@github.com<mailto:notifications@github.com> wrote:
Hi- I'm new to iRep, but am really eager to use it and see my results! I get this error when I run gc_skew: -bash-4.2$ gc_skew -f CB_Spr15_L08_bin.56.fa File "/usr/bin/gc_skew", line 49 print('%s: Too Short' % (name), file=sys.stderr) ^ SyntaxError: invalid syntax
Any help/suggestions would be appreciated!
— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub, or mute the thread.
— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/christophertbrown/iRep/issues/9#issuecomment-306257857, or mute the threadhttps://github.com/notifications/unsubscribe-auth/Ab05RXZHSN9I6zF5PFQphpdQsgckmYcFks5sBEEsgaJpZM4NvZyN.
Hi- I'm new to iRep, but am really eager to use it and see my results! I get this error when I run gc_skew: -bash-4.2$ gc_skew -f CB_Spr15_L08_bin.56.fa File "/usr/bin/gc_skew", line 49 print('%s: Too Short' % (name), file=sys.stderr) ^ SyntaxError: invalid syntax
Any help/suggestions would be appreciated!