Hi, I tried to build and run chrotran. However, I have run into the following error. I would be grateful if you could help resolve this. Regards Jagir Build environment - linux, intel compiler, mpich2, petsc 3.10.2 (as required by current pflotran)

------------------------------ Provenance -------------------------------------- pflotran_compile_date_time = unknown pflotran_compile_user = unknown pflotran_compile_hostname = unknown pflotran_changeset = unknown pflotran_status = unknown petsc_changeset = unknown petsc_status = unknown

"grid_structured_type" set to default value. pflotran card:: CHEMISTRY "chubbite RATE UNITS" set to default value. pflotran card:: TIMESTEPPER pflotran card:: NEWTON_SOLVER pflotran card:: GRID pflotran card:: DATASET pflotran card:: FLUID_PROPERTY "FLUID_PROPERTY,diffusion_coeffient units" set to default value. pflotran card:: MATERIAL_PROPERTY Name :: soil1 pflotran card:: CHARACTERISTIC_CURVES Name :: cc1 pflotran card:: OUTPUT "OUTPUT,FORMAT,HDF5,# FILES" set to default value. pflotran card:: TIME pflotran card:: REGION all pflotran card:: REGION west pflotran card:: REGION east pflotran card:: REGION well_injection pflotran card:: FLOW_CONDITION initial "PRESSURE UNITS" set to default value. WARNING: "iphase" not set in condition; set to 1 pflotran card:: FLOW_CONDITION east "PRESSURE UNITS" set to default value. WARNING: "iphase" not set in condition; set to 1 pflotran card:: FLOW_CONDITION west "PRESSURE UNITS" set to default value. WARNING: "iphase" not set in condition; set to 1 pflotran card:: FLOW_CONDITION well_injection WARNING: "iphase" not set in condition; set to 1 pflotran card:: TRANSPORT_CONDITION initial pflotran card:: TRANSPORT_CONDITION inlet pflotran card:: TRANSPORT_CONDITION injectant pflotran card:: TRANSPORT_CONDITION outlet pflotran card:: CONSTRAINT initial Constraint Species: molasses Constraint Species: ethanol Constraint Species: biocide Constraint Species: Cr(VI) Constraint Immobile: biomass "biomass IMMOBILE CONCENTRATION UNITS" set to default value. Constraint Immobile: molasses_im "molasses_im IMMOBILE CONCENTRATION UNITS" set to default value. Constraint Minerals: chubbite "chubbite SPECIFIC SURFACE_AREA UNITS" set to default value. pflotran card:: CONSTRAINT inlet Constraint Species: molasses Constraint Species: ethanol Constraint Species: biocide Constraint Species: Cr(VI) pflotran card:: CONSTRAINT injectant Constraint Species: molasses Constraint Species: ethanol Constraint Species: biocide Constraint Species: Cr(VI) pflotran card:: INITIAL_CONDITION "Initial Condition name" set to default value. pflotran card:: BOUNDARY_CONDITION pflotran card:: BOUNDARY_CONDITION pflotran card:: SOURCE_SINK pflotran card:: STRATA pflotran card:: END_SUBSURFACE Domain Bounds (x y z): 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00 1.0000000000E+02 1.0000000000E+02 3.0000000000E+01 rank= 0, nlmax= 650, nlx,y,z= 50 13 1, nxs,e = 0 50, nys,e = 0 13, nzs,e = 0 1 rank= 0, ngmax= 714, ngx,y,z= 51 14 1, ngxs,e= 0 51, ngys,e= 0 14, ngzs,e= 0 1 rank= 1, nlmax= 650, nlx,y,z= 50 13 1, nxs,e = 50 100, nys,e = 0 13, nzs,e = 0 1 rank= 1, ngmax= 714, ngx,y,z= 51 14 1, ngxs,e= 49 100, ngys,e= 0 14, ngzs,e= 0 1 rank= 10, nlmax= 600, nlx,y,z= 50 12 1, nxs,e = 0 50, nys,e = 64 76, nzs,e = 0 1 rank= 10, ngmax= 714, ngx,y,z= 51 14 1, ngxs,e= 0 51, ngys,e= 63 77, ngzs,e= 0 1 rank= 2, nlmax= 650, nlx,y,z= 50 13 1, nxs,e = 0 50, nys,e = 13 26, nzs,e = 0 1 rank= 3, nlmax= 650, nlx,y,z= 50 13 1, nxs,e = 50 100, nys,e = 13 26, nzs,e = 0 1 rank= 3, ngmax= 765, ngx,y,z= 51 15 1, ngxs,e= 49 100, ngys,e= 12 27, ngzs,e= 0 1 rank= 6, nlmax= 650, nlx,y,z= 50 13 1, nxs,e = 0 50, nys,e = 39 52, nzs,e = 0 1 rank= 6, ngmax= 765, ngx,y,z= 51 15 1, ngxs,e= 0 51, ngys,e= 38 53, ngzs,e= 0 1 rank= 7, nlmax= 650, nlx,y,z= 50 13 1, nxs,e = 50 100, nys,e = 39 52, nzs,e = 0 1 rank= 7, ngmax= 765, ngx,y,z= 51 15 1, ngxs,e= 49 100, ngys,e= 38 53, ngzs,e= 0 1 rank= 8, nlmax= 600, nlx,y,z= 50 12 1, nxs,e = 0 50, nys,e = 52 64, nzs,e = 0 1 rank= 8, ngmax= 714, ngx,y,z= 51 14 1, ngxs,e= 0 51, ngys,e= 51 65, ngzs,e= 0 1 rank= 9, nlmax= 600, nlx,y,z= 50 12 1, nxs,e = 50 100, nys,e = 52 64, nzs,e = 0 1 rank= 9, ngmax= 714, ngx,y,z= 51 14 1, ngxs,e= 49 100, ngys,e= 51 65, ngzs,e= 0 1 rank= 2, ngmax= 765, ngx,y,z= 51 15 1, ngxs,e= 0 51, ngys,e= 12 27, ngzs,e= 0 1 rank= 4, nlmax= 650, nlx,y,z= 50 13 1, nxs,e = 0 50, nys,e = 26 39, nzs,e = 0 1 rank= 4, ngmax= 765, ngx,y,z= 51 15 1, ngxs,e= 0 51, ngys,e= 25 40, ngzs,e= 0 1 rank= 11, nlmax= 600, nlx,y,z= 50 12 1, nxs,e = 50 100, nys,e = 64 76, nzs,e = 0 1 rank= 11, ngmax= 714, ngx,y,z= 51 14 1, ngxs,e= 49 100, ngys,e= 63 77, ngzs,e= 0 1 rank= 12, nlmax= 600, nlx,y,z= 50 12 1, nxs,e = 0 50, nys,e = 76 88, nzs,e = 0 1 rank= 12, ngmax= 714, ngx,y,z= 51 14 1, ngxs,e= 0 51, ngys,e= 75 89, ngzs,e= 0 1 rank= 13, nlmax= 600, nlx,y,z= 50 12 1, nxs,e = 50 100, nys,e = 76 88, nzs,e = 0 1 rank= 13, ngmax= 714, ngx,y,z= 51 14 1, ngxs,e= 49 100, ngys,e= 75 89, ngzs,e= 0 1 rank= 15, nlmax= 600, nlx,y,z= 50 12 1, nxs,e = 50 100, nys,e = 88 100, nzs,e = 0 1 rank= 15, ngmax= 663, ngx,y,z= 51 13 1, ngxs,e= 49 100, ngys,e= 87 100, ngzs,e= 0 1 rank= 5, nlmax= 650, nlx,y,z= 50 13 1, nxs,e = 50 100, nys,e = 26 39, nzs,e = 0 1 rank= 5, ngmax= 765, ngx,y,z= 51 15 1, ngxs,e= 49 100, ngys,e= 25 40, ngzs,e= 0 1 rank= 14, nlmax= 600, nlx,y,z= 50 12 1, nxs,e = 0 50, nys,e = 88 100, nzs,e = 0 1 rank= 14, ngmax= 663, ngx,y,z= 51 13 1, ngxs,e= 0 51, ngys,e= 87 100, ngzs,e= 0 1 Testing group: Permeability Group "Permeability" in HDF5 file "../k_field100--s2--g1e-4.h5" not found in file. Therefore, assuming a cell-indexed dataset. Opening hdf5 file: ../k_field100--s2--g1e-4.h5 Setting up grid cell indices Reading dataset: Cell Ids 0.01 Seconds to set up indices Reading dataset: Permeability 0.01 Seconds to read real array Closing hdf5 file: ../k_field100--s2--g1e-4.h5 Setting up TRAN Realization Finished setting up TRAN Realization Default HDF5 method is used in Initialization

Requested processors and decomposition = 16, npx,y,z= -1 -1 -1 Actual decomposition: npx,y,z= 2 8 1

Beginning setup of FLOW SNES number of dofs = 1, number of phases = 1 mode = Richards: p Finished setting up FLOW SNES Solver: bcgs Preconditioner: bjacobi Beginning setup of TRAN SNES Finished setting up TRAN SNES Solver: bcgs Preconditioner: bjacobi

FLOW Time Stepper max steps: 999999 max constant cumulative time steps: 5 max cuts: 16 ts reduction factor: 0.50000000000000000 ts maximum growth factor: 2.0000000000000000

FLOW Newton Solver atol: 1.0000E-50 rtol: 1.0000E-08 stol: 1.0000E-08 dtol: 1.0000E+20 maxnorm: 1.0000E+20 inftolres: -9.9900E+02 inftolupd: -9.9900E+02 inftolrelupd: -9.9900E+02 inftolsclres: -9.9900E+02 max iter: 50 min iter: 1 maxf: 10000

matrix type:baij
precond. matrix type:baij
inexact newton: off print convergence: on print detailed convergence: off check infinity norm: on

FLOW Linear Solver solver: bcgs precond: bjacobi atol: 1.0000E-50 rtol: 1.0000E-05 dtol: 1.0000E+04 max iter: 10000

TRAN Time Stepper max steps: 999999 max constant cumulative time steps: 5 max cuts: 16 ts reduction factor: 0.50000000000000000 ts maximum growth factor: 2.0000000000000000

TRAN Newton Solver atol: 1.0000E-50 rtol: 1.0000E-08 stol: 1.0000E-30 dtol: 1.0000E+20 maxnorm: 1.0000E+20 inftolres: 1.0000E-08 inftolupd: -9.9900E+02 inftolrelupd: -9.9900E+02 inftolsclres: -9.9900E+02 max iter: 25 min iter: 1 maxf: 10000

matrix type:baij
precond. matrix type:baij
inexact newton: off print convergence: on print detailed convergence: off check infinity norm: on

TRAN Linear Solver solver: bcgs precond: bjacobi atol: 1.0000E-50 rtol: 1.0000E-05 dtol: 1.0000E+04 max iter: 10000 --> creating hdf5 output file: CT1xi.h5 0.26 Seconds to write HDF5 file.

Finished Initialization

== RICHARDS FLOW =============================================================== [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Corrupt argument: http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: Invalid Pointer to Object: Parameter # 1 [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.10.2, unknown [0]PETSC ERROR: sandbox/chrotran/chrotran_examples/../src/pflotran/chrotran on a arch-linux2-c-debug named hpc6 by rjag008 Fri Jul 19 17:14:46 2019 [0]PETSC ERROR: Configure options --with-debugging --with-mpi-dir=/usr/lib64/mpich-3.2 --with-valgrind-dir=sandbox/valgrind --download-hdf5=yes --download-fblaslapack=yes --download-metis=yes --download-parmetis=yes [0]PETSC ERROR: #1 VecSet() line 540 in sandbox/petsc_debug/src/vec/vec/interface/rvector.c [0]PETSC ERROR: #2 VecZeroEntries() line 1211 in sandbox/petsc_debug/src/vec/vec/interface/vector.c [0]PETSC ERROR: #3 User provided function() line 0 in User file [2]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [2]PETSC ERROR: Corrupt argument: http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [2]PETSC ERROR: Invalid Pointer to Object: Parameter # 1 [2]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [2]PETSC ERROR: Petsc Release Version 3.10.2, unknown [2]PETSC ERROR: sandbox/chrotran/chrotran_examples/../src/pflotran/chrotran on a arch-linux2-c-debug named hpc6 by rjag008 Fri Jul 19 17:14:46 2019 [2]PETSC ERROR: Configure options --with-debugging --with-mpi-dir=/usr/lib64/mpich-3.2 --with-valgrind-dir=sandbox/valgrind --download-hdf5=yes --download-fblaslapack=yes --download-metis=yes --download-parmetis=yes [2]PETSC ERROR: #1 VecSet() line 540 in sandbox/petsc_debug/src/vec/vec/interface/rvector.c [2]PETSC ERROR: #2 VecZeroEntries() line 1211 in sandbox/petsc_debug/src/vec/vec/interface/vector.c [3]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [3]PETSC ERROR: Corrupt argument: http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [3]PETSC ERROR: Invalid Pointer to Object: Parameter # 1 [3]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [3]PETSC ERROR: Petsc Release Version 3.10.2, unknown [3]PETSC ERROR: sandbox/chrotran/chrotran_examples/../src/pflotran/chrotran on a arch-linux2-c-debug named hpc6 by rjag008 Fri Jul 19 17:14:46 2019 [3]PETSC ERROR: Configure options --with-debugging --with-mpi-dir=/usr/lib64/mpich-3.2 --with-valgrind-dir=sandbox/valgrind --download-hdf5=yes --download-fblaslapack=yes --download-metis=yes --download-parmetis=yes [3]PETSC ERROR: #1 VecSet() line 540 in sandbox/petsc_debug/src/vec/vec/interface/rvector.c [3]PETSC ERROR: #2 VecZeroEntries() line 1211 in sandbox/petsc_debug/src/vec/vec/interface/vector.c [3]PETSC ERROR: #3 User provided function() line 0 in User file [4]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [4]PETSC ERROR: Corrupt argument: http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [4]PETSC ERROR: Invalid Pointer to Object: Parameter # 1 [4]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [4]PETSC ERROR: Petsc Release Version 3.10.2, unknown [4]PETSC ERROR: sandbox/chrotran/chrotran_examples/../src/pflotran/chrotran on a arch-linux2-c-debug named hpc6 by rjag008 Fri Jul 19 17:14:46 2019 [4]PETSC ERROR: Configure options --with-debugging --with-mpi-dir=/usr/lib64/mpich-3.2 --with-valgrind-dir=sandbox/valgrind --download-hdf5=yes --download-fblaslapack=yes --download-metis=yes --download-parmetis=yes [4]PETSC ERROR: #1 VecSet() line 540 in sandbox/petsc_debug/src/vec/vec/interface/rvector.c [4]PETSC ERROR: #2 VecZeroEntries() line 1211 in sandbox/petsc_debug/src/vec/vec/interface/vector.c [4]PETSC ERROR: #3 User provided function() line 0 in User file [5]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [5]PETSC ERROR: Corrupt argument: http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [5]PETSC ERROR: Invalid Pointer to Object: Parameter # 1 [5]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [5]PETSC ERROR: Petsc Release Version 3.10.2, unknown [5]PETSC ERROR: sandbox/chrotran/chrotran_examples/../src/pflotran/chrotran on a arch-linux2-c-debug named hpc6 by rjag008 Fri Jul 19 17:14:46 2019 [5]PETSC ERROR: Configure options --with-debugging --with-mpi-dir=/usr/lib64/mpich-3.2 --with-valgrind-dir=sandbox/valgrind --download-hdf5=yes --download-fblaslapack=yes --download-metis=yes --download-parmetis=yes [5]PETSC ERROR: #1 VecSet() line 540 in sandbox/petsc_debug/src/vec/vec/interface/rvector.c [5]PETSC ERROR: #2 VecZeroEntries() line 1211 in sandbox/petsc_debug/src/vec/vec/interface/vector.c [5]PETSC ERROR: #3 User provided function() line 0 in User file [7]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [7]PETSC ERROR: Corrupt argument: http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [7]PETSC ERROR: Invalid Pointer to Object: Parameter # 1 [7]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [7]PETSC ERROR: Petsc Release Version 3.10.2, unknown [7]PETSC ERROR: sandbox/chrotran/chrotran_examples/../src/pflotran/chrotran on a arch-linux2-c-debug named hpc6 by rjag008 Fri Jul 19 17:14:46 2019 [7]PETSC ERROR: Configure options --with-debugging --with-mpi-dir=/usr/lib64/mpich-3.2 --with-valgrind-dir=sandbox/valgrind --download-hdf5=yes --download-fblaslapack=yes --download-metis=yes --download-parmetis=yes [7]PETSC ERROR: #1 VecSet() line 540 in sandbox/petsc_debug/src/vec/vec/interface/rvector.c [7]PETSC ERROR: #2 VecZeroEntries() line 1211 in sandbox/petsc_debug/src/vec/vec/interface/vector.c [7]PETSC ERROR: #3 User provided function() line 0 in User file [8]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [8]PETSC ERROR: Corrupt argument: http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [8]PETSC ERROR: Invalid Pointer to Object: Parameter # 1 [8]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [8]PETSC ERROR: Petsc Release Version 3.10.2, unknown [8]PETSC ERROR: sandbox/chrotran/chrotran_examples/../src/pflotran/chrotran on a arch-linux2-c-debug named hpc6 by rjag008 Fri Jul 19 17:14:46 2019 [8]PETSC ERROR: Configure options --with-debugging --with-mpi-dir=/usr/lib64/mpich-3.2 --with-valgrind-dir=sandbox/valgrind --download-hdf5=yes --download-fblaslapack=yes --download-metis=yes --download-parmetis=yes [8]PETSC ERROR: #1 VecSet() line 540 in sandbox/petsc_debug/src/vec/vec/interface/rvector.c [8]PETSC ERROR: #2 VecZeroEntries() line 1211 in sandbox/petsc_debug/src/vec/vec/interface/vector.c [8]PETSC ERROR: #3 User provided function() line 0 in User file [9]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [9]PETSC ERROR: Corrupt argument: http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [9]PETSC ERROR: Invalid Pointer to Object: Parameter # 1 [9]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [9]PETSC ERROR: Petsc Release Version 3.10.2, unknown [9]PETSC ERROR: sandbox/chrotran/chrotran_examples/../src/pflotran/chrotran on a arch-linux2-c-debug named hpc6 by rjag008 Fri Jul 19 17:14:46 2019 [9]PETSC ERROR: Configure options --with-debugging --with-mpi-dir=/usr/lib64/mpich-3.2 --with-valgrind-dir=sandbox/valgrind --download-hdf5=yes --download-fblaslapack=yes --download-metis=yes --download-parmetis=yes [9]PETSC ERROR: #1 VecSet() line 540 in sandbox/petsc_debug/src/vec/vec/interface/rvector.c [9]PETSC ERROR: #2 VecZeroEntries() line 1211 in sandbox/petsc_debug/src/vec/vec/interface/vector.c [9]PETSC ERROR: #3 User provided function() line 0 in User file [11]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [11]PETSC ERROR: Corrupt argument: http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [11]PETSC ERROR: Invalid Pointer to Object: Parameter # 1 [11]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [11]PETSC ERROR: Petsc Release Version 3.10.2, unknown [11]PETSC ERROR: sandbox/chrotran/chrotran_examples/../src/pflotran/chrotran on a arch-linux2-c-debug named hpc6 by rjag008 Fri Jul 19 17:14:46 2019 [11]PETSC ERROR: Configure options --with-debugging --with-mpi-dir=/usr/lib64/mpich-3.2 --with-valgrind-dir=sandbox/valgrind --download-hdf5=yes --download-fblaslapack=yes --download-metis=yes --download-parmetis=yes [11]PETSC ERROR: #1 VecSet() line 540 in sandbox/petsc_debug/src/vec/vec/interface/rvector.c [11]PETSC ERROR: #2 VecZeroEntries() line 1211 in sandbox/petsc_debug/src/vec/vec/interface/vector.c [11]PETSC ERROR: #3 User provided function() line 0 in User file [13]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [13]PETSC ERROR: Corrupt argument: http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [13]PETSC ERROR: Invalid Pointer to Object: Parameter # 1 [13]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [13]PETSC ERROR: Petsc Release Version 3.10.2, unknown [13]PETSC ERROR: sandbox/chrotran/chrotran_examples/../src/pflotran/chrotran on a arch-linux2-c-debug named hpc6 by rjag008 Fri Jul 19 17:14:46 2019 [13]PETSC ERROR: Configure options --with-debugging --with-mpi-dir=/usr/lib64/mpich-3.2 --with-valgrind-dir=sandbox/valgrind --download-hdf5=yes --download-fblaslapack=yes --download-metis=yes --download-parmetis=yes [13]PETSC ERROR: #1 VecSet() line 540 in sandbox/petsc_debug/src/vec/vec/interface/rvector.c [13]PETSC ERROR: #2 VecZeroEntries() line 1211 in sandbox/petsc_debug/src/vec/vec/interface/vector.c [13]PETSC ERROR: #3 User provided function() line 0 in User file [14]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [14]PETSC ERROR: Corrupt argument: http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [14]PETSC ERROR: Invalid Pointer to Object: Parameter # 1 [14]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [14]PETSC ERROR: Petsc Release Version 3.10.2, unknown [14]PETSC ERROR: sandbox/chrotran/chrotran_examples/../src/pflotran/chrotran on a arch-linux2-c-debug named hpc6 by rjag008 Fri Jul 19 17:14:46 2019 [14]PETSC ERROR: Configure options --with-debugging --with-mpi-dir=/usr/lib64/mpich-3.2 --with-valgrind-dir=sandbox/valgrind --download-hdf5=yes --download-fblaslapack=yes --download-metis=yes --download-parmetis=yes [14]PETSC ERROR: #1 VecSet() line 540 in sandbox/petsc_debug/src/vec/vec/interface/rvector.c [14]PETSC ERROR: #2 VecZeroEntries() line 1211 in sandbox/petsc_debug/src/vec/vec/interface/vector.c [14]PETSC ERROR: #3 User provided function() line 0 in User file [1]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [1]PETSC ERROR: Corrupt argument: http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [1]PETSC ERROR: Invalid Pointer to Object: Parameter # 1 [1]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [1]PETSC ERROR: Petsc Release Version 3.10.2, unknown [1]PETSC ERROR: sandbox/chrotran/chrotran_examples/../src/pflotran/chrotran on a arch-linux2-c-debug named hpc6 by rjag008 Fri Jul 19 17:14:46 2019 [1]PETSC ERROR: Configure options --with-debugging --with-mpi-dir=/usr/lib64/mpich-3.2 --with-valgrind-dir=sandbox/valgrind --download-hdf5=yes --download-fblaslapack=yes --download-metis=yes --download-parmetis=yes [1]PETSC ERROR: #1 VecSet() line 540 in sandbox/petsc_debug/src/vec/vec/interface/rvector.c [1]PETSC ERROR: #2 VecZeroEntries() line 1211 in sandbox/petsc_debug/src/vec/vec/interface/vector.c [1]PETSC ERROR: #3 User provided function() line 0 in User file [2]PETSC ERROR: #3 User provided function() line 0 in User file [15]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [15]PETSC ERROR: Corrupt argument: http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [15]PETSC ERROR: Invalid Pointer to Object: Parameter # 1 [15]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [15]PETSC ERROR: Petsc Release Version 3.10.2, unknown [15]PETSC ERROR: sandbox/chrotran/chrotran_examples/../src/pflotran/chrotran on a arch-linux2-c-debug named hpc6 by rjag008 Fri Jul 19 17:14:46 2019 [15]PETSC ERROR: Configure options --with-debugging --with-mpi-dir=/usr/lib64/mpich-3.2 --with-valgrind-dir=sandbox/valgrind --download-hdf5=yes --download-fblaslapack=yes --download-metis=yes --download-parmetis=yes [15]PETSC ERROR: #1 VecSet() line 540 in sandbox/petsc_debug/src/vec/vec/interface/rvector.c [15]PETSC ERROR: #2 VecZeroEntries() line 1211 in sandbox/petsc_debug/src/vec/vec/interface/vector.c [15]PETSC ERROR: #3 User provided function() line 0 in User file [6]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [6]PETSC ERROR: Corrupt argument: http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [6]PETSC ERROR: Invalid Pointer to Object: Parameter # 1 [6]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [6]PETSC ERROR: Petsc Release Version 3.10.2, unknown [6]PETSC ERROR: [10]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [10]PETSC ERROR: Corrupt argument: http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [10]PETSC ERROR: Invalid Pointer to Object: Parameter # 1 [10]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [12]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [12]PETSC ERROR: Corrupt argument: http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [12]PETSC ERROR: Invalid Pointer to Object: Parameter # 1 [12]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [12]PETSC ERROR: Petsc Release Version 3.10.2, unknown [12]PETSC ERROR: sandbox/chrotran/chrotran_examples/../src/pflotran/chrotran on a arch-linux2-c-debug named hpc6 by rjag008 Fri Jul 19 17:14:46 2019 [12]PETSC ERROR: Configure options --with-debugging --with-mpi-dir=/usr/lib64/mpich-3.2 --with-valgrind-dir=sandbox/valgrind --download-hdf5=yes --download-fblaslapack=yes --download-metis=yes --download-parmetis=yes [12]PETSC ERROR: #1 VecSet() line 540 in sandbox/petsc_debug/src/vec/vec/interface/rvector.c sandbox/chrotran/chrotran_examples/../src/pflotran/chrotran on a arch-linux2-c-debug named hpc6 by rjag008 Fri Jul 19 17:14:46 2019 [6]PETSC ERROR: Configure options --with-debugging --with-mpi-dir=/usr/lib64/mpich-3.2 --with-valgrind-dir=sandbox/valgrind --download-hdf5=yes --download-fblaslapack=yes --download-metis=yes --download-parmetis=yes [6]PETSC ERROR: #1 VecSet() line 540 in sandbox/petsc_debug/src/vec/vec/interface/rvector.c [6]PETSC ERROR: #2 VecZeroEntries() line 1211 in sandbox/petsc_debug/src/vec/vec/interface/vector.c [6]PETSC ERROR: #3 User provided function() line 0 in User file [10]PETSC ERROR: Petsc Release Version 3.10.2, unknown [10]PETSC ERROR: sandbox/chrotran/chrotran_examples/../src/pflotran/chrotran on a arch-linux2-c-debug named hpc6 by rjag008 Fri Jul 19 17:14:46 2019 [10]PETSC ERROR: Configure options --with-debugging --with-mpi-dir=/usr/lib64/mpich-3.2 --with-valgrind-dir=sandbox/valgrind --download-hdf5=yes --download-fblaslapack=yes --download-metis=yes --download-parmetis=yes [10]PETSC ERROR: #1 VecSet() line 540 in sandbox/petsc_debug/src/vec/vec/interface/rvector.c [10]PETSC ERROR: [12]PETSC ERROR: #2 VecZeroEntries() line 1211 in sandbox/petsc_debug/src/vec/vec/interface/vector.c [12]PETSC ERROR: #3 User provided function() line 0 in User file

2 VecZeroEntries() line 1211 in sandbox/petsc_debug/src/vec/vec/interface/vector.c

[10]PETSC ERROR: #3 User provided function() line 0 in User file

===================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = EXIT CODE: 11 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES

APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault (signal 11)

chrotran / release

Unable to run examples #2

------------------------------ Provenance -------------------------------------- pflotran_compile_date_time = unknown pflotran_compile_user = unknown pflotran_compile_hostname = unknown pflotran_changeset = unknown pflotran_status = unknown petsc_changeset = unknown petsc_status = unknown

2 VecZeroEntries() line 1211 in sandbox/petsc_debug/src/vec/vec/interface/vector.c

===================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = EXIT CODE: 11 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES