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chuiqin / irGSEA

The integration of single cell rank-based gene set enrichment analysis
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How to fix it？Error in .local(exprMat, plotStats, nCores, mctype, keepZeroesAsNA, verbose, : unused argument (splitByBlocks = TRUE) #13

Open DocMonster77 opened 1 year ago

DocMonster77 commented 1 year ago

pbmc3k.final <- irGSEA.score(object = pbmc3k.final, assay = "RNA",

  • slot = "data", seeds = 123, ncores = 5,
  • min.cells = 3, min.feature = 0,
  • custom = F, geneset = NULL, msigdb = T,
  • species = "Homo sapiens", category = "H",
  • subcategory = NULL, geneid = "symbol",
  • method = c("AUCell", "UCell", "singscore","ssgsea"),
  • aucell.MaxRank = NULL, ucell.MaxRank = NULL,
  • kcdf = 'Gaussian') Validating object structure Updating object slots Ensuring keys are in the proper strucutre Ensuring feature names don't have underscores or pipes Object representation is consistent with the most current Seurat version Calculate AUCell scores Error in .local(exprMat, plotStats, nCores, mctype, keepZeroesAsNA, verbose, : unused argument (splitByBlocks = TRUE)
chuiqin commented 1 year ago

This error occurs because of an update to the AUCell version. The updated AUCell adds the splitByBlocks parameter. You can uninstall the AUCell package and then install the latest version of AUCell, which will solve this problem.

sugarballer commented 1 year ago

This error occurs because of an update to the AUCell version. The updated AUCell adds the splitByBlocks parameter. You can uninstall the AUCell package and then install the latest version of AUCell, which will solve this problem.

I have updated to the latest version, but it still reports an error

chuiqin commented 1 year ago

This error occurs because of an update to the AUCell version. The updated AUCell adds the splitByBlocks parameter. You can uninstall the AUCell package and then install the latest version of AUCell, which will solve this problem.

I have updated to the latest version, but it still reports an error Can you provide the version of irGSEA? You may need to update irGSEA to the latest version.

Jiangmeling commented 1 year ago

This error occurs because of an update to the AUCell version. The updated AUCell adds the splitByBlocks parameter. You can uninstall the AUCell package and then install the latest version of AUCell, which will solve this problem.

I have updated to the latest version, but it still reports an error

Hi, I met the same problem as you. Have you solved it?