Open Sunyp-IM opened 1 year ago
First, packages 'AUCell', 'ComplexHeatmap', 'decoupleR', 'ggtree', 'Nebulosa', 'singscore' are not available in CRAN. Please consider to install them from Bioconductor as follow:
# install packages from Bioconductor
bioconductor.packages <- c("AUCell", "BiocParallel", "ComplexHeatmap", "decoupleR", "fgsea",
"ggtree", "GSEABase", "GSVA", "Nebulosa", "scde", "singscore",
"SummarizedExperiment", "UCell", "viper")
if (!requireNamespace(bioconductor.packages, quietly = TRUE)) {
BiocManager::install(bioconductor.packages, ask = F, update = F)
}
Second, R installed on the C drive does not seem to have sufficient permissions to read and write. Please consider reinstalling R and installing R on another disk, such as D drive.
Please help me to solve this error, Warning in install.packages : packages ‘UCell’, ‘irGSEA’ are not available for this version of R
Versions of these packages for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages,
Thanks and Regards Surinder Pal
Please help me to solve this error, Warning in install.packages : packages ‘UCell’, ‘irGSEA’ are not available for this version of R
Versions of these packages for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages,
Thanks and Regards Surinder Pal
You can install UCell and irGSEA packages by the following methods.
BiocManager::install("UCell", ask = F, update = F)
devtools::install_github("chuiqin/irGSEA", force =T)
Hello everyone,
I tried to install irGSEA in Windows 10 system, but got the following error:
Do you have any idea of how to fix this?
Best regards and many thanks!