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chuiqin / irGSEA

The integration of single cell rank-based gene set enrichment analysis
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Calculate AUCell scores Error: unused argument (splitByBlocks = TRUE) #27

Closed skye-12138 closed 8 months ago

skye-12138 commented 8 months ago

运行代码如下 test是一个seurat object test <- irGSEA.score(object = test, assay = "RNA", slot = "data", seeds = 123, ncores = 1, min.cells = 3, min.feature = 0, custom = F, geneset = NULL, msigdb = T, species = "Mus musculus", category = "H",
subcategory = NULL, geneid = "symbol", method = c("AUCell", "UCell", "singscore", "ssgsea"), aucell.MaxRank = NULL, ucell.MaxRank = NULL, kcdf = 'Gaussian')

运行报错：

image

最后生成的结果

image

无法没有计算出AUCell的值，查看了一下AUCell是安装上了的，请问是为什么出现这个问题，应该怎么解决呢

版本信息 AUCell 1.16.0 irGSEA 3.1.7 R 4.1.3

chuiqin commented 8 months ago

AUCell版本太低，升级一下AUCell版本

skye-12138 commented 8 months ago

AUCell

skye-12138 commented 8 months ago

AUCell版本太低，升级一下AUCell版本

可以了，多谢

cxjcccc commented 1 month ago

请问如何升级到适合自己R版本的包