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chuiqin / irGSEA

The integration of single cell rank-based gene set enrichment analysis
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Install error #29

Closed yang050036 closed 8 months ago

yang050036 commented 8 months ago

Hi, Thanks for your cool tools. But I found some error in document of install: 

# install packages from Bioconductor
bioconductor.packages <- c("AUCell", "BiocParallel", "ComplexHeatmap", 
                           "decoupleR", "fgsea", "ggtree", "GSEABase", 
                           "GSVA", "Nebulosa", "scde", "singscore",
                           "SummarizedExperiment", "UCell",
                           "viper","sparseMatrixStats")

for (i in bioconductor.packages) {
  if (!requireNamespace(i, quietly = TRUE)) {
    install.packages(i, ask = F, update = F)
  }
}

The function of install.packages could not install the bioconductor packages. There should be Biocmanager::install()