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churchill-lab / g2gtools

Personal diploid genome creation and coordinate conversion
http://churchill-lab.github.io/g2gtools
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conda install error #1

Closed AlicePsyche closed 8 years ago

AlicePsyche commented 8 years ago

Hi,

I am trying to install g2gtools using conda as (g2gtools) $ conda install -c kbchoi g2gtools but I received error report says 

Error:  Dependencies missing in current linux-64 channels:
  - g2gtools -> bx-python >=0.7.2
  - g2gtools -> pysam >=0.8.3

Could you please check if you have provided all the needed dependencies in conda?

Thanks in advance. :)

kbchoi-jax commented 8 years ago

Go back to the root environment first

(g2gtools) $ source deactivate

and do the following,

$ conda config --add channels r
$ conda config --add channels bioconda

and then try install again.

$ source activate g2gtools
(g2gtools) $ conda install -c kbchoi g2gtools
AlicePsyche commented 8 years ago

Thanks a lot ! I have installed it successfully. Sorry for the silly question, I am not familiar with conda...