Open kingralph80 opened 4 years ago
Hey, It seems this error is due to a version difference in python. It seems to work if I run it under python 2.7 but gives this error in python 3.7.1.
Hi @kingralph80, I realise this is now an old old issue! But I'm having a similar issue - is this a case of forcing to run with a specific python version? And if so is there a straightforward way to do that? I installed via the anaconda distribution. Thanks!
Hi, I am using the g2gtools 0.29 commit. I generated the haploid genome with g2gtools. No errors and about 12 mill SNPs were used, and 2.6 million Indels. I mapped against both genomes (ref, g2g_haploid). But when I try to use g2gtools convert to uplift the sam/bam file mapped against the g2g_haploid I get:
Also convert of gtf files seems to work fine.
[g2gtools]