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churchlab / UniRep-analysis

Analysis and figure code from Alley et al. 2019.
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Project is missing some files? #6

Open DorJake opened 4 years ago

DorJake commented 4 years ago

Hi guys,

Thanks for you sharing you work!

When trying to reproduce A007j_pred_v_actual_fpbase_plots.ipynb I found that there is no 'settings' directory in the project directory, and there is no 'common' directory in the secondary directory of the project.So I got ImportError. No way for the code to run properly.

The same problem also exists in A007h_budget_constrained_functional_sequence_recovery_analysis.ipynb and A008c_visualize_ss_feature_predictors_on_protein.ipynb

Hope to help me solve it thank you!

surgebiswas commented 4 years ago

Hi. Just want to let you know this is on our radar and we will fix asap!

arglog commented 3 years ago

Any update on this? I want to retrieve the GFP sequences used in the UniRep paper. To do this, I first need to import A007_common in the jupyter notebook, which is missing unfortunately.