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churchlab / millstone

Genome engineering and analysis software
http://churchlab.github.io/millstone/
MIT License
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Intergenic mutations have no information about surrounding genes #314

Open mlajoie opened 10 years ago

mlajoie commented 10 years ago

Intergenic mutations may affect protein expression (e.g. mutations in RBS or promoters), but there isn't information available for upstream/downstream genes. I though that snpEFF let us do this in the rE. coli lineage sequencing

dbgoodman commented 10 years ago

There's a setting called modifier that snpeff has where you can do this. Maybe its off currently? On Apr 28, 2014 7:18 PM, "mlajoie" notifications@github.com wrote:

Intergenic mutations may affect protein expression (e.g. mutations in RBS or promoters), but there isn't information available for upstream/downstream genes. I though that snpEFF let us do this in the rE. coli lineage sequencing

— Reply to this email directly or view it on GitHubhttps://github.com/churchlab/millstone/issues/314 .