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churchlab / millstone

Genome engineering and analysis software
http://churchlab.github.io/millstone/
MIT License
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New version of SnpEff can give list of predicted effects for a single alt #648

Open glebkuznetsov opened 8 years ago

glebkuznetsov commented 8 years ago

Previously we had a 1:1 mapping between number of alts and number of predicted effects, such that this code did the right thing:

https://github.com/churchlab/millstone/blob/839c4d600b5ab8ea796835b2aba7eb1788ddbdf0/genome_designer/variants/vcf_parser.py#L258

However, the new SnpEff can report multiple predicted effects for a single alt, which throws this off.