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churchlab / millstone

Genome engineering and analysis software
http://churchlab.github.io/millstone/
MIT License
47 stars 19 forks source link

If one of the SV callers fail, the whole pipeline shows an error even though variant calling worked for other parts #650

Open glebkuznetsov opened 8 years ago

glebkuznetsov commented 8 years ago

For example, if Pindel fails, the whole pipeline shows 'FAILED'. We should note that Pindel failed but show the rest of the pipeline succeeded.