Make SnpEff an option the user can control

churchlab / millstone

Genome engineering and analysis software

http://churchlab.github.io/millstone/

MIT License

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Open glebkuznetsov opened 8 years ago

glebkuznetsov commented 8 years ago

This fails from time to time. To at least allow a users a way around it, allow skipping SnpEff.

Also possible to try-catch inside the code in case SnpEff fails in order to be able to get around it.