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churchlab / optmage

Scripts for designing oligos and primers for MAGE (Multiplex Automated Genome Engineering)
MIT License
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Update handling of input targets csv file #5

Open glebkuznetsov opened 10 years ago

glebkuznetsov commented 10 years ago

Currently, optmage parses an inputs targets csv file in order of arguments. Additionally, the headers in the example file have opaque names.

Thus we should:

1) Clean up the input targets template file to have better header names. 2) Parse the file according to column name, and not by order. This will be cleaner code.

dbgoodman commented 10 years ago

Can you give more context here? Not sure what input (?) file interface you mean.

Daniel B. Goodman NSF GRFP Fellow Division of Health Sciences and Technology Massachusetts Institute of Technology Bioinformatics and Integrative Genomics P: (617) 459-2949 | E: dbg@mit.edu www.dbgoodman.com

On Tue, May 20, 2014 at 2:46 PM, Gleb Kuznetsov notifications@github.comwrote:

Right now we're reading positional arguments, but we probably want to read column names; using more of a template file pattern.

— Reply to this email directly or view it on GitHubhttps://github.com/churchlab/optmage/issues/5 .

glebkuznetsov commented 10 years ago

Updated the first comment which describes the issue to clarify.