churchmanlab / genewalk

GeneWalk identifies relevant gene functions for a biological context using network representation learning
https://churchman.med.harvard.edu/genewalk
BSD 2-Clause "Simplified" License
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Don't download all resources up front #24

Closed bgyori closed 3 years ago

bgyori commented 3 years ago

This PR removes a line from the CLI which, under any set of arguments, downloads all resource files with the resource manager. This is not ideal because it will also download resource files that may not be needed for a given run (for instance with --network_source sif, the PathwayCommons resource file would still be downloaded even though not needed). I also added a note to the README about how one can (optionally) pre-download all resource files to avoid downloading them during runtime.