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churchmanlab / genewalk

GeneWalk identifies relevant gene functions for a biological context using network representation learning
https://churchman.med.harvard.edu/genewalk
BSD 2-Clause "Simplified" License
127 stars 14 forks source link

Rat genome #27

Closed amitpande74 closed 3 years ago

amitpande74 commented 3 years ago

Hi, I want to do analysis of genes in the Rat genome. Is this possible. Kindly let me know.

regards, Amit.

ri23 commented 3 years ago

Hi @amitpande74 , We would recommend that you map the rat genes to human genes yourself and then run GeneWalk with the human genes as input list. In this way you can curate yourself that the rat genes you are interested are mapped to the correct human homologs. The mouse genes are also mapped to human orthologs in GeneWalk, but in that case automatically. So if you prefer you could map rat genes to mouse first, but GeneWalk will then still map them to human homologs as well. Best, Robert