Test CLI directly - Githubissues

churchmanlab / genewalk

GeneWalk identifies relevant gene functions for a biological context using network representation learning

https://churchman.med.harvard.edu/genewalk

BSD 2-Clause "Simplified" License

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Test CLI directly #43

Closed bgyori closed 3 years ago

bgyori commented 3 years ago

This PR adds a new step to the automated tests where the CLI is called directly from the command line instead of being called with a wrapper with nosetests. This allows detecting issues with the argument parsing for the CLI.