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churchmanlab / genewalk

GeneWalk identifies relevant gene functions for a biological context using network representation learning
https://churchman.med.harvard.edu/genewalk
BSD 2-Clause "Simplified" License
128 stars 15 forks source link

Support Ensembl ID lists #5

Closed bgyori closed 4 years ago

bgyori commented 4 years ago

This PR add support for human Ensembl gene IDs as an input gene list. Fixes #3

bgyori commented 4 years ago

Before merging this, I will need to release a new INDRA version

chrarnold commented 4 years ago

That is awesome, thanks! Will test it next week! Do you also provide warnings in case IDs could not been mapped?

bgyori commented 4 years ago

Yes, generally you will get a list of warnings, but the analysis will otherwise proceed with the rest of the genes that were successfully mapped.