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churchmanlab / genewalk

GeneWalk identifies relevant gene functions for a biological context using network representation learning
https://churchman.med.harvard.edu/genewalk
BSD 2-Clause "Simplified" License
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extending to KEGG #73

Closed lli-rice closed 2 months ago

lli-rice commented 2 months ago

Hi,

It's a very cool method. I'm wondering if the method could be extended to enrichment on KEGG terms?

Thanks!

ri23 commented 2 months ago

Hi, This should be possible if you assemble a custom network with KEGG and provide that as input to GeneWalk, with flag --network_source {edge_list,sif} See the documentation for further info. We have unfortunately no bandwidth to further assist with this. Best of luck, Robert