meddwl
commented
2 years ago Dear user,
you can install plip pip install plip to solve this problem. ( https://github.com/pharmai/plip )
Or an alternative option is to install new version of pharmd which is located in the cgr branch. The new version of the code uses different packages to search for protein-ligand interactions. For this you need to install next packages:
pip install git+https://github.com/meddwl/pharmd.git@cgr # new version, it uses CGRtools and PharmaContacts to determine protein-ligand interactions
pip install git+https://github.com/meddwl/psearch.git@gen_pharms # to make the code work, you need this version of psearch. The pmapper package will be installed automatically
pip install CGRtools
pip install https://github.com/stsouko/PharmaContacts.git
Dear peers, I am facing a problem while executing the command 'md2pharm'. The terminal was appeared as- no module name 'Philip.modules'. How can I solve the issue??