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cianfrocco-lab / COSMIC-CryoEM-Gateway

Web platform for analyzing cryo-EM data on Comet cluster at San Diego Supercomputer Center
http://cosmic-cryoem.org
GNU General Public License v3.0
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globus upload doesn't find .star file in nested directory? #280

Closed kenneth59715 closed 3 years ago

kenneth59715 commented 3 years ago

I put a job directory with star file one level down, and this did not show up in datalist: on staging, seems to fail to find job007.nested, inside job007: [kenneth@comet-ln3 in3]$ ls -R testnested testnested: Extract

testnested/Extract: Icon job007 job007.dup

testnested/Extract/job007: default_pipeline.star Movies run.err Icon note.txt run.job job007.nested particles_cosmic_path_updated.star run.out job_pipeline.star particles.star

testnested/Extract/job007/job007.nested: default_pipeline.star note.txt run.job Icon particles_cosmic_path_updated.star run.out job_pipeline.star particles.star Movies run.err

testnested/Extract/job007/job007.nested/Movies: 20170629_00021_frameImage.mrcs 20170629_00024_frameImage.mrcs 20170629_00022_frameImage.mrcs 20170629_00025_frameImage.mrcs 20170629_00023_frameImage.mrcs Icon

testnested/Extract/job007/Movies: 20170629_00021_frameImage.mrcs 20170629_00024_frameImage.mrcs 20170629_00022_frameImage.mrcs 20170629_00025_frameImage.mrcs 20170629_00023_frameImage.mrcs Icon

testnested/Extract/job007.dup: default_pipeline.star note.txt run.job Icon particles_cosmic_path_updated.star run.out job_pipeline.star particles.star Movies run.err

testnested/Extract/job007.dup/Movies: 20170629_00021_frameImage.mrcs 20170629_00024_frameImage.mrcs 20170629_00022_frameImage.mrcs 20170629_00025_frameImage.mrcs 20170629_00023_frameImage.mrcs Icon

mcianfrocco commented 3 years ago

Related to #252