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cidgoh / DataHarmonizer

A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions from the National Microbiome Data Collaborative (NMDC), the LinkML development team, and others.
MIT License
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CNPHI Export - Symptom Label Conversions #136

Closed cmrn-rhi closed 3 years ago

cmrn-rhi commented 3 years ago

Some symptoms have to have their label converted for the CNPHI export, as CNPHI already has established, equivalent labels and does not wish to change them.

Data Harmonizer "Host (common name)" Label CNPHI "Animal Type" Label
Cow bovine
Pig porcine
Data Harmonizer "Signs and Symptoms" Label CNPHI "Symptoms" Label
Acute Respiratory Distress Syndrome ARDS
Chills (sudden cold sensation) Chills
Conjunctivitis (pink eye) Conjunctivitis
Diarrhea (watery stool) Diarrhea, watery
Encephalitis (brain inflammation) Encephalitis
Fatigue (tiredness) Fatigue
Fever (>=38°C) Fever
ddooley commented 3 years ago

We can add those CNPHI labels directly under CNPHI column of DataHarmonizer Template and they should be converted to the CNPHI values on export.

ddooley commented 3 years ago

I've added the translations into the CNPHI column. Next vocab update will incorporate them.