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cidgoh / DataHarmonizer

A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions from the National Microbiome Data Collaborative (NMDC), the LinkML development team, and others.
MIT License
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PHA4GE template to Biosample export: need code to add host_disease_stage field #156

Closed griffie closed 3 years ago

griffie commented 3 years ago

Currently, there is no info recorded for "host_disease_stage" in the PHA4GE template, but that field needs to appear in the NCBI Biosample export. Can you add some code to have that field output in the export although it will be blank?

ddooley commented 3 years ago

Do you mean blank or should it have a default "Missing" value?

griffie commented 3 years ago

Just blank. It's an optional field so we don't have to provide any values. We just need the field to appear. Can leave it empty.

ddooley commented 3 years ago

Ok, this is now in master.