A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions from the National Microbiome Data Collaborative (NMDC), the LinkML development team, and others.
In the CanCOGeN template, the export in NML LIMS format has PH_INSTRUMENT_CGN and PH_SAMPLING_DETAILS being reported after the DH provenance (DH provenance is called HC_COMMENT. After that field all the lower case DH-specific vocab appears. Before the HC_COMMENTS field all the stuff NML cares about is reported in all caps).
Can we move PH_INSTRUMENT_CGN just after PH_REASON_FOR_SEQUENCING_DETAILS?
And can we move PH_SAMPLING_DETAILS just after HC_SAMPLE_CATEGORY?
ddooley
commented
3 years ago
In the CanCOGeN template, the export in NML LIMS format has PH_INSTRUMENT_CGN and PH_SAMPLING_DETAILS being reported after the DH provenance (DH provenance is called HC_COMMENT. After that field all the lower case DH-specific vocab appears. Before the HC_COMMENTS field all the stuff NML cares about is reported in all caps).
Can we move PH_INSTRUMENT_CGN just after PH_REASON_FOR_SEQUENCING_DETAILS? And can we move PH_SAMPLING_DETAILS just after HC_SAMPLE_CATEGORY?
Thanks!